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ENCODE cell lines, expression (Ernst 2011)

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ISMARA results ENCODE cell lines, expression (Ernst 2011)

ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.

All motifs sorted by activity significance

Motif name	Z-value	Associated genes
YBX1_FOS_NFYC_NFYA_NFYB_CEBPZ	5.14	YBX1 Ensembl NCBI GeneCards UniProt FOS Ensembl NCBI GeneCards UniProt NFYC Ensembl NCBI GeneCards UniProt NFYA Ensembl NCBI GeneCards UniProt NFYB Ensembl NCBI GeneCards UniProt CEBPZ Ensembl NCBI GeneCards UniProt
ZEB1	5.10	ZEB1 Ensembl NCBI GeneCards UniProt
IRF2_STAT2_IRF8_IRF1	4.88	IRF2 Ensembl NCBI GeneCards UniProt STAT2 Ensembl NCBI GeneCards UniProt IRF8 Ensembl NCBI GeneCards UniProt IRF1 Ensembl NCBI GeneCards UniProt
TEAD3_TEAD1	4.78	TEAD3 Ensembl NCBI GeneCards UniProt TEAD1 Ensembl NCBI GeneCards UniProt
HNF1A_HNF1B	4.44	HNF1A Ensembl NCBI GeneCards UniProt HNF1B Ensembl NCBI GeneCards UniProt
SRF	4.00	SRF Ensembl NCBI GeneCards UniProt
TAF1	3.88	TAF1 Ensembl NCBI GeneCards UniProt
SPIB	3.64	SPIB Ensembl NCBI GeneCards UniProt
KLF16_SP2	3.56	KLF16 Ensembl NCBI GeneCards UniProt SP2 Ensembl NCBI GeneCards UniProt
E2F7_E2F1	3.31	E2F7 Ensembl NCBI GeneCards UniProt E2F1 Ensembl NCBI GeneCards UniProt
KLF1	3.22	KLF1 Ensembl NCBI GeneCards UniProt
ESRRA_ESR2	3.21	ESRRA Ensembl NCBI GeneCards UniProt ESR2 Ensembl NCBI GeneCards UniProt
WT1_MTF1_ZBTB7B	3.19	WT1 Ensembl NCBI GeneCards UniProt MTF1 Ensembl NCBI GeneCards UniProt ZBTB7B Ensembl NCBI GeneCards UniProt
SPI1	3.10	SPI1 Ensembl NCBI GeneCards UniProt
ELF2_GABPA_ELF5	3.07	ELF2 Ensembl NCBI GeneCards UniProt GABPA Ensembl NCBI GeneCards UniProt ELF5 Ensembl NCBI GeneCards UniProt
ZNF263	2.86	ZNF263 Ensembl NCBI GeneCards UniProt
MXI1_MYC_MYCN	2.85	MXI1 Ensembl NCBI GeneCards UniProt MYC Ensembl NCBI GeneCards UniProt MYCN Ensembl NCBI GeneCards UniProt
POU2F2_POU3F1	2.83	POU2F2 Ensembl NCBI GeneCards UniProt POU3F1 Ensembl NCBI GeneCards UniProt
SOX3_SOX2	2.80	SOX3 Ensembl NCBI GeneCards UniProt SOX2 Ensembl NCBI GeneCards UniProt
FOSL1	2.68	FOSL1 Ensembl NCBI GeneCards UniProt
NRF1	2.64	NRF1 Ensembl NCBI GeneCards UniProt
ID4_TCF4_SNAI2	2.63	ID4 Ensembl NCBI GeneCards UniProt TCF4 Ensembl NCBI GeneCards UniProt SNAI2 Ensembl NCBI GeneCards UniProt
TBP	2.61	TBP Ensembl NCBI GeneCards UniProt
SMAD1	2.46	SMAD1 Ensembl NCBI GeneCards UniProt
TLX1_NFIC	2.44	TLX1 Ensembl NCBI GeneCards UniProt NFIC Ensembl NCBI GeneCards UniProt
EP300	2.41	EP300 Ensembl NCBI GeneCards UniProt
ZNF652	2.37	ZNF652 Ensembl NCBI GeneCards UniProt
ELK4_ETV5_ELK1_ELK3_ELF4	2.35	ELK4 Ensembl NCBI GeneCards UniProt ETV5 Ensembl NCBI GeneCards UniProt ELK1 Ensembl NCBI GeneCards UniProt ELK3 Ensembl NCBI GeneCards UniProt ELF4 Ensembl NCBI GeneCards UniProt
TCF12_ASCL2	2.34	TCF12 Ensembl NCBI GeneCards UniProt ASCL2 Ensembl NCBI GeneCards UniProt
SPIC	2.33	SPIC Ensembl NCBI GeneCards UniProt
E2F2_E2F5	2.27	E2F2 Ensembl NCBI GeneCards UniProt E2F5 Ensembl NCBI GeneCards UniProt
IKZF1	2.26	IKZF1 Ensembl NCBI GeneCards UniProt
HNF4A	2.25	HNF4A Ensembl NCBI GeneCards UniProt
PAX5	2.24	PAX5 Ensembl NCBI GeneCards UniProt
FOSL2_SMARCC1	2.24	FOSL2 Ensembl NCBI GeneCards UniProt SMARCC1 Ensembl NCBI GeneCards UniProt
XBP1	2.21	XBP1 Ensembl NCBI GeneCards UniProt
STAT1_STAT3_BCL6	2.17	STAT1 Ensembl NCBI GeneCards UniProt STAT3 Ensembl NCBI GeneCards UniProt BCL6 Ensembl NCBI GeneCards UniProt
RCOR1_MTA3	2.17	RCOR1 Ensembl NCBI GeneCards UniProt MTA3 Ensembl NCBI GeneCards UniProt
GFI1B	2.16	GFI1B Ensembl NCBI GeneCards UniProt
NFATC2_NFATC3	2.16	NFATC2 Ensembl NCBI GeneCards UniProt NFATC3 Ensembl NCBI GeneCards UniProt
RUNX1_RUNX2	2.15	RUNX1 Ensembl NCBI GeneCards UniProt RUNX2 Ensembl NCBI GeneCards UniProt
SIN3A_CHD1	2.15	SIN3A Ensembl NCBI GeneCards UniProt CHD1 Ensembl NCBI GeneCards UniProt
MAZ_ZNF281_GTF2F1	2.14	MAZ Ensembl NCBI GeneCards UniProt ZNF281 Ensembl NCBI GeneCards UniProt GTF2F1 Ensembl NCBI GeneCards UniProt
EBF1	2.13	EBF1 Ensembl NCBI GeneCards UniProt
ETV1_ERF_FEV_ELF1	2.12	ETV1 Ensembl NCBI GeneCards UniProt ERF Ensembl NCBI GeneCards UniProt FEV Ensembl NCBI GeneCards UniProt ELF1 Ensembl NCBI GeneCards UniProt
SP1	2.08	SP1 Ensembl NCBI GeneCards UniProt
CREB1	2.07	CREB1 Ensembl NCBI GeneCards UniProt
WRNIP1	2.07	WRNIP1 Ensembl NCBI GeneCards UniProt
SP4_PML	2.06	SP4 Ensembl NCBI GeneCards UniProt PML Ensembl NCBI GeneCards UniProt
MEF2D_MEF2A	2.05	MEF2D Ensembl NCBI GeneCards UniProt MEF2A Ensembl NCBI GeneCards UniProt
GATA1_GATA4	2.04	GATA1 Ensembl NCBI GeneCards UniProt GATA4 Ensembl NCBI GeneCards UniProt
MYB	2.03	MYB Ensembl NCBI GeneCards UniProt
MYOD1	1.98	MYOD1 Ensembl NCBI GeneCards UniProt
PITX1	1.97	PITX1 Ensembl NCBI GeneCards UniProt
MEF2C	1.96	MEF2C Ensembl NCBI GeneCards UniProt
CEBPE_CEBPD	1.95	CEBPE Ensembl NCBI GeneCards UniProt CEBPD Ensembl NCBI GeneCards UniProt
HOXB6_PRRX2	1.92	HOXB6 Ensembl NCBI GeneCards UniProt PRRX2 Ensembl NCBI GeneCards UniProt
BACH1_NFE2_NFE2L2	1.91	BACH1 Ensembl NCBI GeneCards UniProt NFE2 Ensembl NCBI GeneCards UniProt NFE2L2 Ensembl NCBI GeneCards UniProt
HSF1	1.90	HSF1 Ensembl NCBI GeneCards UniProt
TP63	1.90	TP63 Ensembl NCBI GeneCards UniProt
NFKB1	1.89	NFKB1 Ensembl NCBI GeneCards UniProt
HIC2	1.85	HIC2 Ensembl NCBI GeneCards UniProt
POU5F1_POU2F3	1.85	POU5F1 Ensembl NCBI GeneCards UniProt POU2F3 Ensembl NCBI GeneCards UniProt
MESP1	1.83	MESP1 Ensembl NCBI GeneCards UniProt
SOX5	1.82	SOX5 Ensembl NCBI GeneCards UniProt
MAFB	1.82	MAFB Ensembl NCBI GeneCards UniProt
ZBTB33_CHD2	1.81	ZBTB33 Ensembl NCBI GeneCards UniProt CHD2 Ensembl NCBI GeneCards UniProt
SIX5_SMARCC2_HCFC1	1.80	SIX5 Ensembl NCBI GeneCards UniProt SMARCC2 Ensembl NCBI GeneCards UniProt HCFC1 Ensembl NCBI GeneCards UniProt
ZNF740_ZNF219	1.79	ZNF740 Ensembl NCBI GeneCards UniProt ZNF219 Ensembl NCBI GeneCards UniProt
RARG	1.79	RARG Ensembl NCBI GeneCards UniProt
CUUUGGU	1.78	hsa-miR-9-5p miRBase
HIVEP1	1.78	HIVEP1 Ensembl NCBI GeneCards UniProt
JUN	1.76	JUN Ensembl NCBI GeneCards UniProt
AGCACCA	1.76	hsa-miR-29a-3p miRBase hsa-miR-29b-3p miRBase hsa-miR-29c-3p miRBase
NFIX_NFIB	1.76	NFIX Ensembl NCBI GeneCards UniProt NFIB Ensembl NCBI GeneCards UniProt
AHR_ARNT2	1.75	AHR Ensembl NCBI GeneCards UniProt ARNT2 Ensembl NCBI GeneCards UniProt
ATF2_ATF1_ATF3	1.74	ATF2 Ensembl NCBI GeneCards UniProt ATF1 Ensembl NCBI GeneCards UniProt ATF3 Ensembl NCBI GeneCards UniProt
FOXO4	1.73	FOXO4 Ensembl NCBI GeneCards UniProt
NR1I2	1.73	NR1I2 Ensembl NCBI GeneCards UniProt
ZNF143	1.72	ZNF143 Ensembl NCBI GeneCards UniProt
FOXK1_FOXP2_FOXB1_FOXP3	1.71	FOXK1 Ensembl NCBI GeneCards UniProt FOXP2 Ensembl NCBI GeneCards UniProt FOXB1 Ensembl NCBI GeneCards UniProt FOXP3 Ensembl NCBI GeneCards UniProt
ZBTB18	1.70	ZBTB18 Ensembl NCBI GeneCards UniProt
ZNF711_TFAP2A_TFAP2D	1.69	ZNF711 Ensembl NCBI GeneCards UniProt TFAP2A Ensembl NCBI GeneCards UniProt TFAP2D Ensembl NCBI GeneCards UniProt
UAGUGUU	1.69
HNF4G	1.68	HNF4G Ensembl NCBI GeneCards UniProt
HOXC10_HOXD13	1.68	HOXC10 Ensembl NCBI GeneCards UniProt HOXD13 Ensembl NCBI GeneCards UniProt
MAFF_MAFG	1.66	MAFF Ensembl NCBI GeneCards UniProt MAFG Ensembl NCBI GeneCards UniProt
HOXB4_LHX9	1.66	HOXB4 Ensembl NCBI GeneCards UniProt LHX9 Ensembl NCBI GeneCards UniProt
CCCUGAG	1.64	hsa-miR-125a-5p miRBase hsa-miR-125b-5p miRBase hsa-miR-4319 miRBase
GUGCAAA	1.63	hsa-miR-19a-3p miRBase hsa-miR-19b-3p miRBase
PLAGL1	1.60	PLAGL1 Ensembl NCBI GeneCards UniProt
FLI1	1.60	FLI1 Ensembl NCBI GeneCards UniProt
TFAP2C	1.60	TFAP2C Ensembl NCBI GeneCards UniProt
RFX3_RFX2	1.59	RFX3 Ensembl NCBI GeneCards UniProt RFX2 Ensembl NCBI GeneCards UniProt
TAL1	1.58	TAL1 Ensembl NCBI GeneCards UniProt
HIC1	1.58	HIC1 Ensembl NCBI GeneCards UniProt
THRA_RXRB	1.58	THRA Ensembl NCBI GeneCards UniProt RXRB Ensembl NCBI GeneCards UniProt
AAAGUGC	1.58	hsa-miR-17-5p miRBase hsa-miR-20a-5p miRBase hsa-miR-20b-5p miRBase hsa-miR-93-5p miRBase hsa-miR-106a-5p miRBase hsa-miR-106b-5p miRBase hsa-miR-519d-3p miRBase hsa-miR-526b-3p miRBase
TBX1	1.57	TBX1 Ensembl NCBI GeneCards UniProt
SREBF1_TFE3	1.57	SREBF1 Ensembl NCBI GeneCards UniProt TFE3 Ensembl NCBI GeneCards UniProt
CREB5_CREM_JUNB	1.56	CREB5 Ensembl NCBI GeneCards UniProt CREM Ensembl NCBI GeneCards UniProt JUNB Ensembl NCBI GeneCards UniProt
HMX1	1.55	HMX1 Ensembl NCBI GeneCards UniProt
ETS1	1.55	ETS1 Ensembl NCBI GeneCards UniProt
TFDP1	1.54	TFDP1 Ensembl NCBI GeneCards UniProt
GMEB2	1.54	GMEB2 Ensembl NCBI GeneCards UniProt
ESRRB_ESRRG	1.54	ESRRB Ensembl NCBI GeneCards UniProt ESRRG Ensembl NCBI GeneCards UniProt
IRF7	1.53	IRF7 Ensembl NCBI GeneCards UniProt
TCF3_MYOG	1.53	TCF3 Ensembl NCBI GeneCards UniProt MYOG Ensembl NCBI GeneCards UniProt
CEBPB	1.52	CEBPB Ensembl NCBI GeneCards UniProt
BPTF	1.52	BPTF Ensembl NCBI GeneCards UniProt
MBD2	1.51	MBD2 Ensembl NCBI GeneCards UniProt
NR3C1	1.51	NR3C1 Ensembl NCBI GeneCards UniProt
FOXA2_FOXJ3	1.51	FOXA2 Ensembl NCBI GeneCards UniProt FOXJ3 Ensembl NCBI GeneCards UniProt
SOX4	1.50	SOX4 Ensembl NCBI GeneCards UniProt
PKNOX1_TGIF2	1.50	PKNOX1 Ensembl NCBI GeneCards UniProt TGIF2 Ensembl NCBI GeneCards UniProt
SMAD4	1.49	SMAD4 Ensembl NCBI GeneCards UniProt
ETV7	1.49	ETV7 Ensembl NCBI GeneCards UniProt
TP53	1.48	TP53 Ensembl NCBI GeneCards UniProt
PATZ1_KLF4	1.48	PATZ1 Ensembl NCBI GeneCards UniProt KLF4 Ensembl NCBI GeneCards UniProt
RFX5	1.48	RFX5 Ensembl NCBI GeneCards UniProt
RREB1	1.47	RREB1 Ensembl NCBI GeneCards UniProt
EPAS1_BCL3	1.47	EPAS1 Ensembl NCBI GeneCards UniProt BCL3 Ensembl NCBI GeneCards UniProt
EZH2	1.47	EZH2 Ensembl NCBI GeneCards UniProt
RXRA_NR2F6_NR2C2	1.47	RXRA Ensembl NCBI GeneCards UniProt NR2F6 Ensembl NCBI GeneCards UniProt NR2C2 Ensembl NCBI GeneCards UniProt
IRF6_IRF4_IRF5	1.47	IRF6 Ensembl NCBI GeneCards UniProt IRF4 Ensembl NCBI GeneCards UniProt IRF5 Ensembl NCBI GeneCards UniProt
NR5A2	1.47	NR5A2 Ensembl NCBI GeneCards UniProt
POU3F2	1.46	POU3F2 Ensembl NCBI GeneCards UniProt
TCF7L2	1.45	TCF7L2 Ensembl NCBI GeneCards UniProt
TWIST1_SNAI1	1.44	TWIST1 Ensembl NCBI GeneCards UniProt SNAI1 Ensembl NCBI GeneCards UniProt
CUX1	1.44	CUX1 Ensembl NCBI GeneCards UniProt
SOX6	1.44	SOX6 Ensembl NCBI GeneCards UniProt
IRF9	1.44	IRF9 Ensembl NCBI GeneCards UniProt
GATA2	1.43	GATA2 Ensembl NCBI GeneCards UniProt
SOX17	1.43	SOX17 Ensembl NCBI GeneCards UniProt
SOX10_SOX15	1.42	SOX10 Ensembl NCBI GeneCards UniProt SOX15 Ensembl NCBI GeneCards UniProt
TLX2	1.41	TLX2 Ensembl NCBI GeneCards UniProt
NFATC1	1.41	NFATC1 Ensembl NCBI GeneCards UniProt
PBX3	1.40	PBX3 Ensembl NCBI GeneCards UniProt
TGIF1	1.40	TGIF1 Ensembl NCBI GeneCards UniProt
BATF	1.39	BATF Ensembl NCBI GeneCards UniProt
DLX1_HOXA3_BARX2	1.39	DLX1 Ensembl NCBI GeneCards UniProt HOXA3 Ensembl NCBI GeneCards UniProt BARX2 Ensembl NCBI GeneCards UniProt
NFIL3	1.39	NFIL3 Ensembl NCBI GeneCards UniProt
MYF6	1.39	MYF6 Ensembl NCBI GeneCards UniProt
GSC_GSC2	1.39	GSC Ensembl NCBI GeneCards UniProt GSC2 Ensembl NCBI GeneCards UniProt
SCRT1_SCRT2	1.39	SCRT1 Ensembl NCBI GeneCards UniProt SCRT2 Ensembl NCBI GeneCards UniProt
PRDM1	1.38	PRDM1 Ensembl NCBI GeneCards UniProt
ARNT	1.38	ARNT Ensembl NCBI GeneCards UniProt
ELF3_EHF	1.35	ELF3 Ensembl NCBI GeneCards UniProt EHF Ensembl NCBI GeneCards UniProt
ZBTB6	1.35	ZBTB6 Ensembl NCBI GeneCards UniProt
TFAP4_MSC	1.35	TFAP4 Ensembl NCBI GeneCards UniProt MSC Ensembl NCBI GeneCards UniProt
TFCP2L1	1.34	TFCP2L1 Ensembl NCBI GeneCards UniProt
HOXB8	1.34	HOXB8 Ensembl NCBI GeneCards UniProt
MYBL2	1.34	MYBL2 Ensembl NCBI GeneCards UniProt
HBP1	1.33	HBP1 Ensembl NCBI GeneCards UniProt
GUAGUGU	1.33	hsa-miR-142-3p.1 miRBase
FOXD3_FOXI1_FOXF1	1.33	FOXD3 Ensembl NCBI GeneCards UniProt FOXI1 Ensembl NCBI GeneCards UniProt FOXF1 Ensembl NCBI GeneCards UniProt
SMAD3	1.33	SMAD3 Ensembl NCBI GeneCards UniProt
IRF3	1.33	IRF3 Ensembl NCBI GeneCards UniProt
RELA	1.33	RELA Ensembl NCBI GeneCards UniProt
DLX4_HOXD8	1.32	DLX4 Ensembl NCBI GeneCards UniProt HOXD8 Ensembl NCBI GeneCards UniProt
ERG	1.32	ERG Ensembl NCBI GeneCards UniProt
E2F6	1.32	E2F6 Ensembl NCBI GeneCards UniProt
JUND	1.32	JUND Ensembl NCBI GeneCards UniProt
FOSB	1.31	FOSB Ensembl NCBI GeneCards UniProt
FOXO3_FOXD2	1.31	FOXO3 Ensembl NCBI GeneCards UniProt FOXD2 Ensembl NCBI GeneCards UniProt
ZBTB4	1.31	ZBTB4 Ensembl NCBI GeneCards UniProt
MAFK	1.31	MAFK Ensembl NCBI GeneCards UniProt
MZF1	1.30	MZF1 Ensembl NCBI GeneCards UniProt
HES1	1.30	HES1 Ensembl NCBI GeneCards UniProt
MIXL1_GSX1_BSX_MEOX2_LHX4	1.30	MIXL1 Ensembl NCBI GeneCards UniProt GSX1 Ensembl NCBI GeneCards UniProt BSX Ensembl NCBI GeneCards UniProt MEOX2 Ensembl NCBI GeneCards UniProt LHX4 Ensembl NCBI GeneCards UniProt
AR_NR3C2	1.30	AR Ensembl NCBI GeneCards UniProt NR3C2 Ensembl NCBI GeneCards UniProt
FOXM1_TBL1XR1	1.29	FOXM1 Ensembl NCBI GeneCards UniProt TBL1XR1 Ensembl NCBI GeneCards UniProt
POU3F3_POU3F4	1.29	POU3F3 Ensembl NCBI GeneCards UniProt POU3F4 Ensembl NCBI GeneCards UniProt
NKX3-1	1.29	NKX3-1 Ensembl NCBI GeneCards UniProt
CPEB1	1.28	CPEB1 Ensembl NCBI GeneCards UniProt
YY1_YY2	1.28	YY1 Ensembl NCBI GeneCards UniProt YY2 Ensembl NCBI GeneCards UniProt
GLI3	1.28	GLI3 Ensembl NCBI GeneCards UniProt
GAGGUAG	1.28	hsa-let-7a-5p miRBase hsa-let-7b-5p miRBase hsa-let-7c-5p miRBase hsa-let-7d-5p miRBase hsa-let-7e-5p miRBase hsa-let-7f-5p miRBase hsa-let-7g-5p miRBase hsa-let-7i-5p miRBase hsa-miR-98-5p miRBase hsa-miR-4458 miRBase hsa-miR-4500 miRBase
AAUACUG	1.27	hsa-miR-200b-3p miRBase hsa-miR-200c-3p miRBase hsa-miR-429 miRBase
HOMEZ	1.27	HOMEZ Ensembl NCBI GeneCards UniProt
TBX15_MGA	1.27	TBX15 Ensembl NCBI GeneCards UniProt MGA Ensembl NCBI GeneCards UniProt
NFE2L1	1.27	NFE2L1 Ensembl NCBI GeneCards UniProt
TFAP2B	1.26	TFAP2B Ensembl NCBI GeneCards UniProt
MEIS2	1.25	MEIS2 Ensembl NCBI GeneCards UniProt
NFATC4	1.24	NFATC4 Ensembl NCBI GeneCards UniProt
HOXA10_HOXB9	1.24	HOXA10 Ensembl NCBI GeneCards UniProt HOXB9 Ensembl NCBI GeneCards UniProt
SP3	1.24	SP3 Ensembl NCBI GeneCards UniProt
HOXC12_HOXD12	1.23	HOXC12 Ensembl NCBI GeneCards UniProt HOXD12 Ensembl NCBI GeneCards UniProt
PPARA	1.22	PPARA Ensembl NCBI GeneCards UniProt
IKZF2	1.22	IKZF2 Ensembl NCBI GeneCards UniProt
STAT5A	1.22	STAT5A Ensembl NCBI GeneCards UniProt
UGCAUAG	1.21	hsa-miR-153-3p miRBase
SP100	1.21	SP100 Ensembl NCBI GeneCards UniProt
OLIG2_NEUROD1_ATOH1	1.21	OLIG2 Ensembl NCBI GeneCards UniProt NEUROD1 Ensembl NCBI GeneCards UniProt ATOH1 Ensembl NCBI GeneCards UniProt
BARHL2	1.21	BARHL2 Ensembl NCBI GeneCards UniProt
IRX3	1.21	IRX3 Ensembl NCBI GeneCards UniProt
PBX1	1.21	PBX1 Ensembl NCBI GeneCards UniProt
NKX2-3	1.21	NKX2-3 Ensembl NCBI GeneCards UniProt
KLF8	1.21	KLF8 Ensembl NCBI GeneCards UniProt
KLF14_SP8	1.21	KLF14 Ensembl NCBI GeneCards UniProt SP8 Ensembl NCBI GeneCards UniProt
HMX3	1.20	HMX3 Ensembl NCBI GeneCards UniProt
PAX6	1.20	PAX6 Ensembl NCBI GeneCards UniProt
SHOX2_HOXC5	1.20	SHOX2 Ensembl NCBI GeneCards UniProt HOXC5 Ensembl NCBI GeneCards UniProt
NKX3-2	1.20	NKX3-2 Ensembl NCBI GeneCards UniProt
ONECUT1	1.19	ONECUT1 Ensembl NCBI GeneCards UniProt
MLXIPL	1.19	MLXIPL Ensembl NCBI GeneCards UniProt
SREBF2	1.19	SREBF2 Ensembl NCBI GeneCards UniProt
E2F8	1.18	E2F8 Ensembl NCBI GeneCards UniProt
REL	1.18	REL Ensembl NCBI GeneCards UniProt
NKX2-6	1.18	NKX2-6 Ensembl NCBI GeneCards UniProt
GATA5	1.18	GATA5 Ensembl NCBI GeneCards UniProt
STAT6	1.17	STAT6 Ensembl NCBI GeneCards UniProt
LHX6	1.17	LHX6 Ensembl NCBI GeneCards UniProt
AUUGCAC	1.17	hsa-miR-25-3p miRBase hsa-miR-32-5p miRBase hsa-miR-92a-3p miRBase hsa-miR-92b-3p miRBase hsa-miR-363-3p miRBase hsa-miR-367-3p miRBase
GLI2	1.16	GLI2 Ensembl NCBI GeneCards UniProt
TEAD4	1.16	TEAD4 Ensembl NCBI GeneCards UniProt
SOX9	1.16	SOX9 Ensembl NCBI GeneCards UniProt
ISL1	1.16	ISL1 Ensembl NCBI GeneCards UniProt
ACAGUAU	1.15	hsa-miR-144-3p miRBase
PAX4	1.15	PAX4 Ensembl NCBI GeneCards UniProt
TCF7	1.15	TCF7 Ensembl NCBI GeneCards UniProt
CUX2	1.15	CUX2 Ensembl NCBI GeneCards UniProt
PLAG1	1.14	PLAG1 Ensembl NCBI GeneCards UniProt
NR2E3	1.14	NR2E3 Ensembl NCBI GeneCards UniProt
GLIS2	1.14	GLIS2 Ensembl NCBI GeneCards UniProt
ATF6	1.14	ATF6 Ensembl NCBI GeneCards UniProt
ZNF384	1.14	ZNF384 Ensembl NCBI GeneCards UniProt
DRGX_PROP1	1.13	DRGX Ensembl NCBI GeneCards UniProt PROP1 Ensembl NCBI GeneCards UniProt
OLIG3_NEUROD2_NEUROG2	1.13	OLIG3 Ensembl NCBI GeneCards UniProt NEUROD2 Ensembl NCBI GeneCards UniProt NEUROG2 Ensembl NCBI GeneCards UniProt
HOXB3	1.13	HOXB3 Ensembl NCBI GeneCards UniProt
HMBOX1	1.13	HMBOX1 Ensembl NCBI GeneCards UniProt
HIF1A	1.13	HIF1A Ensembl NCBI GeneCards UniProt
GATA3	1.13	GATA3 Ensembl NCBI GeneCards UniProt
ESR1	1.12	ESR1 Ensembl NCBI GeneCards UniProt
RELB	1.11	RELB Ensembl NCBI GeneCards UniProt
MEF2B	1.11	MEF2B Ensembl NCBI GeneCards UniProt
FOXL1	1.11	FOXL1 Ensembl NCBI GeneCards UniProt
FOXC1	1.11	FOXC1 Ensembl NCBI GeneCards UniProt
RARB	1.11	RARB Ensembl NCBI GeneCards UniProt
PAX8	1.11	PAX8 Ensembl NCBI GeneCards UniProt
SRY	1.11	SRY Ensembl NCBI GeneCards UniProt
ZIC3_ZIC4	1.10	ZIC3 Ensembl NCBI GeneCards UniProt ZIC4 Ensembl NCBI GeneCards UniProt
UCCAGUU	1.10	hsa-miR-145-5p miRBase hsa-miR-5195-3p miRBase
RFX7_RFX4_RFX1	1.10	RFX7 Ensembl NCBI GeneCards UniProt RFX4 Ensembl NCBI GeneCards UniProt RFX1 Ensembl NCBI GeneCards UniProt
ZNF148	1.10	ZNF148 Ensembl NCBI GeneCards UniProt
FOXA1	1.10	FOXA1 Ensembl NCBI GeneCards UniProt
LHX3	1.10	LHX3 Ensembl NCBI GeneCards UniProt
ATF4	1.09	ATF4 Ensembl NCBI GeneCards UniProt
BARX1	1.09	BARX1 Ensembl NCBI GeneCards UniProt
RUNX3_BCL11A	1.08	RUNX3 Ensembl NCBI GeneCards UniProt BCL11A Ensembl NCBI GeneCards UniProt
FOXD1_FOXO1_FOXO6_FOXG1_FOXP1	1.08	FOXD1 Ensembl NCBI GeneCards UniProt FOXO1 Ensembl NCBI GeneCards UniProt FOXO6 Ensembl NCBI GeneCards UniProt FOXG1 Ensembl NCBI GeneCards UniProt FOXP1 Ensembl NCBI GeneCards UniProt
CDC5L	1.08	CDC5L Ensembl NCBI GeneCards UniProt
HOXD9	1.08	HOXD9 Ensembl NCBI GeneCards UniProt
SIX6	1.07	SIX6 Ensembl NCBI GeneCards UniProt
HSF4	1.07	HSF4 Ensembl NCBI GeneCards UniProt
NR6A1	1.07	NR6A1 Ensembl NCBI GeneCards UniProt
CEBPG	1.06	CEBPG Ensembl NCBI GeneCards UniProt
VAX1_GSX2	1.06	VAX1 Ensembl NCBI GeneCards UniProt GSX2 Ensembl NCBI GeneCards UniProt
HES7_HES5	1.05	HES7 Ensembl NCBI GeneCards UniProt HES5 Ensembl NCBI GeneCards UniProt
ZFX	1.05	ZFX Ensembl NCBI GeneCards UniProt
NR2E1	1.05	NR2E1 Ensembl NCBI GeneCards UniProt
SOX13_SOX12	1.04	SOX13 Ensembl NCBI GeneCards UniProt SOX12 Ensembl NCBI GeneCards UniProt
RARA	1.04	RARA Ensembl NCBI GeneCards UniProt
CREB3L2	1.04	CREB3L2 Ensembl NCBI GeneCards UniProt
FIGLA	1.04	FIGLA Ensembl NCBI GeneCards UniProt
RHOXF1	1.04	RHOXF1 Ensembl NCBI GeneCards UniProt
LEF1	1.03	LEF1 Ensembl NCBI GeneCards UniProt
NR4A1	1.03	NR4A1 Ensembl NCBI GeneCards UniProt
VENTX	1.03	VENTX Ensembl NCBI GeneCards UniProt
NFAT5	1.03	NFAT5 Ensembl NCBI GeneCards UniProt
EOMES	1.02	EOMES Ensembl NCBI GeneCards UniProt
ZBTB12	1.02	ZBTB12 Ensembl NCBI GeneCards UniProt
SOX8	1.01	SOX8 Ensembl NCBI GeneCards UniProt
BARHL1	1.01	BARHL1 Ensembl NCBI GeneCards UniProt
BACH2	1.01	BACH2 Ensembl NCBI GeneCards UniProt
ZNF784	1.00	ZNF784 Ensembl NCBI GeneCards UniProt
DLX3_EVX1_MEOX1	1.00	DLX3 Ensembl NCBI GeneCards UniProt EVX1 Ensembl NCBI GeneCards UniProt MEOX1 Ensembl NCBI GeneCards UniProt
GTF2I	1.00	GTF2I Ensembl NCBI GeneCards UniProt
GATA6	1.00	GATA6 Ensembl NCBI GeneCards UniProt
MYBL1	1.00	MYBL1 Ensembl NCBI GeneCards UniProt
PGR	1.00	PGR Ensembl NCBI GeneCards UniProt
AGCAGCA	1.00	hsa-miR-15a-5p miRBase hsa-miR-15b-5p miRBase hsa-miR-16-5p miRBase hsa-miR-195-5p miRBase hsa-miR-424-5p miRBase hsa-miR-497-5p miRBase hsa-miR-6838-5p miRBase
PITX3	0.99	PITX3 Ensembl NCBI GeneCards UniProt
MSX1	0.99	MSX1 Ensembl NCBI GeneCards UniProt
OSR1_OSR2	0.99	OSR1 Ensembl NCBI GeneCards UniProt OSR2 Ensembl NCBI GeneCards UniProt
ETV2	0.99	ETV2 Ensembl NCBI GeneCards UniProt
GMEB1	0.99	GMEB1 Ensembl NCBI GeneCards UniProt
HOXC13	0.99	HOXC13 Ensembl NCBI GeneCards UniProt
DPRX	0.99	DPRX Ensembl NCBI GeneCards UniProt
NKX2-8	0.98	NKX2-8 Ensembl NCBI GeneCards UniProt
GGAAUGU	0.98	hsa-miR-1-3p miRBase hsa-miR-206 miRBase hsa-miR-613 miRBase
UAUUGCU	0.98	hsa-miR-137 miRBase
AGUGGUU	0.98	hsa-miR-140-5p miRBase
TFCP2	0.98	TFCP2 Ensembl NCBI GeneCards UniProt
HSFY2	0.97	HSFY2 Ensembl NCBI GeneCards UniProt
TCF7L1	0.97	TCF7L1 Ensembl NCBI GeneCards UniProt
ETV6	0.97	ETV6 Ensembl NCBI GeneCards UniProt
NR4A3	0.96	NR4A3 Ensembl NCBI GeneCards UniProt
NFIA	0.96	NFIA Ensembl NCBI GeneCards UniProt
E2F3	0.96	E2F3 Ensembl NCBI GeneCards UniProt
HOXA2_HOXB1	0.96	HOXA2 Ensembl NCBI GeneCards UniProt HOXB1 Ensembl NCBI GeneCards UniProt
PPARG	0.95	PPARG Ensembl NCBI GeneCards UniProt
JDP2	0.95	JDP2 Ensembl NCBI GeneCards UniProt
CDX1	0.95	CDX1 Ensembl NCBI GeneCards UniProt
STAT4	0.95	STAT4 Ensembl NCBI GeneCards UniProt
AGGUAGU	0.95	hsa-miR-196a-5p miRBase hsa-miR-196b-5p miRBase
FOXJ2	0.94	FOXJ2 Ensembl NCBI GeneCards UniProt
HAND1	0.94	HAND1 Ensembl NCBI GeneCards UniProt
FUBP1	0.94	FUBP1 Ensembl NCBI GeneCards UniProt
DBP	0.94	DBP Ensembl NCBI GeneCards UniProt
GRHL1	0.94	GRHL1 Ensembl NCBI GeneCards UniProt
CAGUGCA	0.94	hsa-miR-148a-3p miRBase hsa-miR-148b-3p miRBase hsa-miR-152-3p miRBase
KLF13	0.94	KLF13 Ensembl NCBI GeneCards UniProt
ZNF524	0.93	ZNF524 Ensembl NCBI GeneCards UniProt
MAF_NRL	0.93	MAF Ensembl NCBI GeneCards UniProt NRL Ensembl NCBI GeneCards UniProt
GCUGGUG	0.93	hsa-miR-138-5p miRBase
RXRG	0.92	RXRG Ensembl NCBI GeneCards UniProt
FOXQ1	0.92	FOXQ1 Ensembl NCBI GeneCards UniProt
FOXF2_FOXJ1	0.92	FOXF2 Ensembl NCBI GeneCards UniProt FOXJ1 Ensembl NCBI GeneCards UniProt
ZBTB49	0.92	ZBTB49 Ensembl NCBI GeneCards UniProt
PRRX1_ALX4_PHOX2A	0.92	PRRX1 Ensembl NCBI GeneCards UniProt ALX4 Ensembl NCBI GeneCards UniProt PHOX2A Ensembl NCBI GeneCards UniProt
HOXB7	0.92	HOXB7 Ensembl NCBI GeneCards UniProt
EMX1	0.92	EMX1 Ensembl NCBI GeneCards UniProt
EBF3	0.91	EBF3 Ensembl NCBI GeneCards UniProt
HOXA1	0.91	HOXA1 Ensembl NCBI GeneCards UniProt
NR0B1	0.91	NR0B1 Ensembl NCBI GeneCards UniProt
GFI1	0.91	GFI1 Ensembl NCBI GeneCards UniProt
NFKB2	0.91	NFKB2 Ensembl NCBI GeneCards UniProt
RORA	0.90	RORA Ensembl NCBI GeneCards UniProt
RAD21_SMC3	0.90	RAD21 Ensembl NCBI GeneCards UniProt SMC3 Ensembl NCBI GeneCards UniProt
MECP2	0.89	MECP2 Ensembl NCBI GeneCards UniProt
DUXA	0.89	DUXA Ensembl NCBI GeneCards UniProt
SIX1_SIX3_SIX2	0.89	SIX1 Ensembl NCBI GeneCards UniProt SIX3 Ensembl NCBI GeneCards UniProt SIX2 Ensembl NCBI GeneCards UniProt
GCAGCAU	0.88	hsa-miR-103a-3p miRBase hsa-miR-107 miRBase
STAT5B	0.88	STAT5B Ensembl NCBI GeneCards UniProt
TBX5	0.88	TBX5 Ensembl NCBI GeneCards UniProt
ZSCAN4	0.88	ZSCAN4 Ensembl NCBI GeneCards UniProt
MNT_HEY1_HEY2	0.88	MNT Ensembl NCBI GeneCards UniProt HEY1 Ensembl NCBI GeneCards UniProt HEY2 Ensembl NCBI GeneCards UniProt
EGR3_EGR2	0.86	EGR3 Ensembl NCBI GeneCards UniProt EGR2 Ensembl NCBI GeneCards UniProt
AAGGUGC	0.86	hsa-miR-18a-5p miRBase hsa-miR-18b-5p miRBase hsa-miR-4735-3p miRBase
HOXA6	0.86	HOXA6 Ensembl NCBI GeneCards UniProt
HOXB2_UNCX_HOXD3	0.86	HOXB2 Ensembl NCBI GeneCards UniProt UNCX Ensembl NCBI GeneCards UniProt HOXD3 Ensembl NCBI GeneCards UniProt
DBX2_HLX	0.86	DBX2 Ensembl NCBI GeneCards UniProt HLX Ensembl NCBI GeneCards UniProt
PROX1	0.86	PROX1 Ensembl NCBI GeneCards UniProt
NR4A2	0.86	NR4A2 Ensembl NCBI GeneCards UniProt
ARID3A	0.86	ARID3A Ensembl NCBI GeneCards UniProt
NANOG	0.86	NANOG Ensembl NCBI GeneCards UniProt
ATF7	0.85	ATF7 Ensembl NCBI GeneCards UniProt
ETV4_ETS2	0.85	ETV4 Ensembl NCBI GeneCards UniProt ETS2 Ensembl NCBI GeneCards UniProt
TFEC_MITF_ARNTL_BHLHE41	0.85	TFEC Ensembl NCBI GeneCards UniProt MITF Ensembl NCBI GeneCards UniProt ARNTL Ensembl NCBI GeneCards UniProt BHLHE41 Ensembl NCBI GeneCards UniProt
UACAGUA	0.85	hsa-miR-101-3p.2 miRBase
ARID5A	0.85	ARID5A Ensembl NCBI GeneCards UniProt
ZNF423	0.85	ZNF423 Ensembl NCBI GeneCards UniProt
LMX1B_MNX1_RAX2	0.84	LMX1B Ensembl NCBI GeneCards UniProt MNX1 Ensembl NCBI GeneCards UniProt RAX2 Ensembl NCBI GeneCards UniProt
HMX2	0.84	HMX2 Ensembl NCBI GeneCards UniProt
NKX6-2	0.84	NKX6-2 Ensembl NCBI GeneCards UniProt
ALX3	0.83	ALX3 Ensembl NCBI GeneCards UniProt
ZBTB7A_ZBTB7C	0.83	ZBTB7A Ensembl NCBI GeneCards UniProt ZBTB7C Ensembl NCBI GeneCards UniProt
SOX14	0.82	SOX14 Ensembl NCBI GeneCards UniProt
SOX11	0.82	SOX11 Ensembl NCBI GeneCards UniProt
OTP_PHOX2B_LHX1_LMX1A_LHX5_HOXC4	0.82	OTP Ensembl NCBI GeneCards UniProt PHOX2B Ensembl NCBI GeneCards UniProt LHX1 Ensembl NCBI GeneCards UniProt LMX1A Ensembl NCBI GeneCards UniProt LHX5 Ensembl NCBI GeneCards UniProt HOXC4 Ensembl NCBI GeneCards UniProt HOXC4 Ensembl NCBI GeneCards UniProt
CREB3L1_CREB3	0.82	CREB3L1 Ensembl NCBI GeneCards UniProt CREB3 Ensembl NCBI GeneCards UniProt
EGR1_EGR4	0.82	EGR1 Ensembl NCBI GeneCards UniProt EGR4 Ensembl NCBI GeneCards UniProt
CEBPA	0.81	CEBPA Ensembl NCBI GeneCards UniProt
VAX2_RHOXF2	0.81	VAX2 Ensembl NCBI GeneCards UniProt RHOXF2 Ensembl NCBI GeneCards UniProt
NR2C1	0.81	NR2C1 Ensembl NCBI GeneCards UniProt
MAFA	0.81	MAFA Ensembl NCBI GeneCards UniProt
HOXA13	0.81	HOXA13 Ensembl NCBI GeneCards UniProt
KLF15	0.81	KLF15 Ensembl NCBI GeneCards UniProt
UGGCACU	0.81
ETV3	0.81	ETV3 Ensembl NCBI GeneCards UniProt
KLF6	0.81	KLF6 Ensembl NCBI GeneCards UniProt
GGCUCAG	0.81	hsa-miR-24-3p miRBase
TBX3	0.80	TBX3 Ensembl NCBI GeneCards UniProt
SHOX	0.80	SHOX Ensembl NCBI GeneCards UniProt SHOX Ensembl NCBI GeneCards UniProt
SOX18	0.80	SOX18 Ensembl NCBI GeneCards UniProt
HOXD4	0.80	HOXD4 Ensembl NCBI GeneCards UniProt
BCL6B	0.80	BCL6B Ensembl NCBI GeneCards UniProt
EN1_ESX1_GBX1	0.80	EN1 Ensembl NCBI GeneCards UniProt ESX1 Ensembl NCBI GeneCards UniProt GBX1 Ensembl NCBI GeneCards UniProt
LHX8	0.79	LHX8 Ensembl NCBI GeneCards UniProt
SMAD2	0.79	SMAD2 Ensembl NCBI GeneCards UniProt
CCAGUGU	0.79	hsa-miR-199a-5p miRBase hsa-miR-199b-5p miRBase
GZF1	0.79	GZF1 Ensembl NCBI GeneCards UniProt
PAX3	0.78	PAX3 Ensembl NCBI GeneCards UniProt
POU6F2	0.78	POU6F2 Ensembl NCBI GeneCards UniProt
CAGUAGU	0.78	hsa-miR-199a-3p miRBase hsa-miR-199b-3p miRBase hsa-miR-3129-5p miRBase
GCM1	0.78	GCM1 Ensembl NCBI GeneCards UniProt
AUGGCUU	0.77	hsa-miR-135a-5p miRBase hsa-miR-135b-5p miRBase
CXXC1	0.77	CXXC1 Ensembl NCBI GeneCards UniProt
UGGUCCC	0.77	hsa-miR-133a-3p.1 miRBase
MEIS1	0.76	MEIS1 Ensembl NCBI GeneCards UniProt
BHLHE40	0.76	BHLHE40 Ensembl NCBI GeneCards UniProt
EN2_GBX2_LBX2	0.76	EN2 Ensembl NCBI GeneCards UniProt GBX2 Ensembl NCBI GeneCards UniProt LBX2 Ensembl NCBI GeneCards UniProt
FOXA3_FOXC2	0.76	FOXA3 Ensembl NCBI GeneCards UniProt FOXC2 Ensembl NCBI GeneCards UniProt
HOXD11_HOXA11	0.76	HOXD11 Ensembl NCBI GeneCards UniProt HOXA11 Ensembl NCBI GeneCards UniProt
ACCCUGU	0.76	hsa-miR-10a-5p miRBase hsa-miR-10b-5p miRBase
AGUGCAA	0.76	hsa-miR-130a-3p miRBase hsa-miR-130b-3p miRBase hsa-miR-301a-3p miRBase hsa-miR-301b-3p miRBase hsa-miR-454-3p miRBase hsa-miR-3666 miRBase hsa-miR-4295 miRBase
ARID5B	0.76	ARID5B Ensembl NCBI GeneCards UniProt
CLOCK	0.75	CLOCK Ensembl NCBI GeneCards UniProt
NR1H2	0.75	NR1H2 Ensembl NCBI GeneCards UniProt
NKX2-1	0.75	NKX2-1 Ensembl NCBI GeneCards UniProt
TBX20	0.75	TBX20 Ensembl NCBI GeneCards UniProt
TCF21	0.75	TCF21 Ensembl NCBI GeneCards UniProt
E2F4	0.75	E2F4 Ensembl NCBI GeneCards UniProt
PTF1A	0.75	PTF1A Ensembl NCBI GeneCards UniProt
TBX2	0.74	TBX2 Ensembl NCBI GeneCards UniProt
CTCF_CTCFL	0.74	CTCF Ensembl NCBI GeneCards UniProt CTCFL Ensembl NCBI GeneCards UniProt
MLX_USF2_USF1_PAX2	0.74	MLX Ensembl NCBI GeneCards UniProt USF2 Ensembl NCBI GeneCards UniProt USF1 Ensembl NCBI GeneCards UniProt PAX2 Ensembl NCBI GeneCards UniProt
ZBTB14	0.74	ZBTB14 Ensembl NCBI GeneCards UniProt
UUGGUCC	0.74	hsa-miR-133a-3p.2 miRBase hsa-miR-133b miRBase
EMX2	0.74	EMX2 Ensembl NCBI GeneCards UniProt
GCM2	0.74	GCM2 Ensembl NCBI GeneCards UniProt
HDX	0.73	HDX Ensembl NCBI GeneCards UniProt
TBX19	0.73	TBX19 Ensembl NCBI GeneCards UniProt
UCACAGU	0.73	hsa-miR-27a-3p miRBase hsa-miR-27b-3p miRBase
HOXD10	0.73	HOXD10 Ensembl NCBI GeneCards UniProt
HOXC8	0.73	HOXC8 Ensembl NCBI GeneCards UniProt
UAAGGCA	0.72	hsa-miR-124-3p.2 miRBase hsa-miR-506-3p miRBase
KLF12	0.72	KLF12 Ensembl NCBI GeneCards UniProt
MECOM	0.72	MECOM Ensembl NCBI GeneCards UniProt
ATF5	0.72	ATF5 Ensembl NCBI GeneCards UniProt
NR2F2	0.71	NR2F2 Ensembl NCBI GeneCards UniProt
T	0.71	T Ensembl NCBI GeneCards UniProt
E4F1	0.70	E4F1 Ensembl NCBI GeneCards UniProt
GAUUGUC	0.70	hsa-miR-219a-5p miRBase hsa-miR-4782-3p miRBase hsa-miR-6766-3p miRBase
CCUUCAU	0.70	hsa-miR-205-5p miRBase
CACAGUG	0.70	hsa-miR-128-3p miRBase hsa-miR-216a-3p miRBase hsa-miR-3681-3p miRBase
MEIS3_TGIF2LX	0.70	MEIS3 Ensembl NCBI GeneCards UniProt TGIF2LX Ensembl NCBI GeneCards UniProt
HESX1	0.70	HESX1 Ensembl NCBI GeneCards UniProt
TFAP2E	0.69	TFAP2E Ensembl NCBI GeneCards UniProt
TBX4	0.69	TBX4 Ensembl NCBI GeneCards UniProt
POU1F1	0.69	POU1F1 Ensembl NCBI GeneCards UniProt
ZIC2_GLI1	0.69	ZIC2 Ensembl NCBI GeneCards UniProt GLI1 Ensembl NCBI GeneCards UniProt
AACACUG	0.69	hsa-miR-141-3p miRBase hsa-miR-200a-3p miRBase
HOXB13	0.69	HOXB13 Ensembl NCBI GeneCards UniProt
HOXA9	0.69	HOXA9 Ensembl NCBI GeneCards UniProt
AGCUGCC	0.68	hsa-miR-22-3p miRBase
TBX21_TBR1	0.68	TBX21 Ensembl NCBI GeneCards UniProt TBR1 Ensembl NCBI GeneCards UniProt
PKNOX2	0.68	PKNOX2 Ensembl NCBI GeneCards UniProt
SOX30	0.68	SOX30 Ensembl NCBI GeneCards UniProt
RORC	0.68	RORC Ensembl NCBI GeneCards UniProt
BRCA1	0.68	BRCA1 Ensembl NCBI GeneCards UniProt
CBFB	0.68	CBFB Ensembl NCBI GeneCards UniProt
SIX4	0.67	SIX4 Ensembl NCBI GeneCards UniProt
HOXC6_HOXA7	0.67	HOXC6 Ensembl NCBI GeneCards UniProt HOXA7 Ensembl NCBI GeneCards UniProt
IRX2	0.67	IRX2 Ensembl NCBI GeneCards UniProt
SOX1	0.67	SOX1 Ensembl NCBI GeneCards UniProt
BHLHE22_BHLHA15_BHLHE23	0.67	BHLHE22 Ensembl NCBI GeneCards UniProt BHLHA15 Ensembl NCBI GeneCards UniProt BHLHE23 Ensembl NCBI GeneCards UniProt
HOXC9	0.66	HOXC9 Ensembl NCBI GeneCards UniProt
ZBTB16	0.66	ZBTB16 Ensembl NCBI GeneCards UniProt
IRX5	0.66	IRX5 Ensembl NCBI GeneCards UniProt
ISL2	0.66	ISL2 Ensembl NCBI GeneCards UniProt
INSM1	0.65	INSM1 Ensembl NCBI GeneCards UniProt
PAX7_NOBOX	0.65	PAX7 Ensembl NCBI GeneCards UniProt NOBOX Ensembl NCBI GeneCards UniProt
HOXA4	0.65	HOXA4 Ensembl NCBI GeneCards UniProt
PRDM4	0.65	PRDM4 Ensembl NCBI GeneCards UniProt
SOX7	0.65	SOX7 Ensembl NCBI GeneCards UniProt SOX7 Ensembl NCBI GeneCards UniProt
GLIS3	0.64	GLIS3 Ensembl NCBI GeneCards UniProt
NKX2-4	0.64	NKX2-4 Ensembl NCBI GeneCards UniProt
ZNF35	0.64	ZNF35 Ensembl NCBI GeneCards UniProt
TP73	0.63	TP73 Ensembl NCBI GeneCards UniProt
DDIT3	0.63	DDIT3 Ensembl NCBI GeneCards UniProt
GGCAGUG	0.63	hsa-miR-34a-5p miRBase hsa-miR-34c-5p miRBase hsa-miR-449a miRBase hsa-miR-449b-5p miRBase
HMGA2	0.63	HMGA2 Ensembl NCBI GeneCards UniProt
HOXD1	0.62	HOXD1 Ensembl NCBI GeneCards UniProt
HMGA1	0.62	HMGA1 Ensembl NCBI GeneCards UniProt
BBX	0.62	BBX Ensembl NCBI GeneCards UniProt
ZNF333	0.62	ZNF333 Ensembl NCBI GeneCards UniProt
THRB	0.62	THRB Ensembl NCBI GeneCards UniProt
AUAAAGU	0.62	hsa-miR-142-5p miRBase hsa-miR-5590-3p miRBase
DMC1	0.62	DMC1 Ensembl NCBI GeneCards UniProt
PPARD	0.62	PPARD Ensembl NCBI GeneCards UniProt
AAGGCAC	0.61	hsa-miR-124-3p.1 miRBase
PBX2	0.61	PBX2 Ensembl NCBI GeneCards UniProt
UUGGCAC	0.61	hsa-miR-96-5p miRBase hsa-miR-1271-5p miRBase
UUGGCAA	0.61	hsa-miR-182-5p miRBase
REST	0.61	REST Ensembl NCBI GeneCards UniProt
GUAAACA	0.61	hsa-miR-30a-5p miRBase hsa-miR-30b-5p miRBase hsa-miR-30c-5p miRBase hsa-miR-30d-5p miRBase hsa-miR-30e-5p miRBase
EVX2	0.61	EVX2 Ensembl NCBI GeneCards UniProt
HOXC11	0.60	HOXC11 Ensembl NCBI GeneCards UniProt
GCUACAU	0.60	hsa-miR-221-3p miRBase hsa-miR-222-3p miRBase
RBPJ	0.59	RBPJ Ensembl NCBI GeneCards UniProt
KLF3	0.59	KLF3 Ensembl NCBI GeneCards UniProt
NR1D1	0.59	NR1D1 Ensembl NCBI GeneCards UniProt
VDR	0.59	VDR Ensembl NCBI GeneCards UniProt
HSF2	0.58	HSF2 Ensembl NCBI GeneCards UniProt
OLIG1	0.58	OLIG1 Ensembl NCBI GeneCards UniProt
MAX_TFEB	0.58	MAX Ensembl NCBI GeneCards UniProt TFEB Ensembl NCBI GeneCards UniProt
UGAAAUG	0.58
HLF_TEF	0.57	HLF Ensembl NCBI GeneCards UniProt TEF Ensembl NCBI GeneCards UniProt
HOXB5	0.57	HOXB5 Ensembl NCBI GeneCards UniProt
VSX1	0.57	VSX1 Ensembl NCBI GeneCards UniProt
CDX2	0.57	CDX2 Ensembl NCBI GeneCards UniProt
POU2F1	0.57	POU2F1 Ensembl NCBI GeneCards UniProt
GGAAGAC	0.57	hsa-miR-7-5p miRBase
HINFP	0.57	HINFP Ensembl NCBI GeneCards UniProt
ZKSCAN1	0.57	ZKSCAN1 Ensembl NCBI GeneCards UniProt
DLX5	0.57	DLX5 Ensembl NCBI GeneCards UniProt
NHLH1	0.55	NHLH1 Ensembl NCBI GeneCards UniProt
ACAUUCA	0.55	hsa-miR-181a-5p miRBase hsa-miR-181b-5p miRBase hsa-miR-181c-5p miRBase hsa-miR-181d-5p miRBase hsa-miR-4262 miRBase
AGUGCUU	0.55	hsa-miR-302c-3p.2 miRBase hsa-miR-520f-3p miRBase
AGCAGCG	0.55	hsa-miR-503-5p miRBase
POU6F1	0.55	POU6F1 Ensembl NCBI GeneCards UniProt
GUAACAG	0.54	hsa-miR-194-5p miRBase
CENPB	0.54	CENPB Ensembl NCBI GeneCards UniProt
ZFHX3	0.54	ZFHX3 Ensembl NCBI GeneCards UniProt
NOTO_VSX2_DLX2_DLX6_NKX6-1	0.54	NOTO Ensembl NCBI GeneCards UniProt VSX2 Ensembl NCBI GeneCards UniProt DLX2 Ensembl NCBI GeneCards UniProt DLX6 Ensembl NCBI GeneCards UniProt NKX6-1 Ensembl NCBI GeneCards UniProt
ZNF274	0.53	ZNF274 Ensembl NCBI GeneCards UniProt
NKX1-2_RAX	0.53	NKX1-2 Ensembl NCBI GeneCards UniProt RAX Ensembl NCBI GeneCards UniProt
NR1H4	0.53	NR1H4 Ensembl NCBI GeneCards UniProt
SPDEF	0.52	SPDEF Ensembl NCBI GeneCards UniProt
NKX2-5	0.52	NKX2-5 Ensembl NCBI GeneCards UniProt
HOXA5	0.51	HOXA5 Ensembl NCBI GeneCards UniProt
NKX6-3	0.51	NKX6-3 Ensembl NCBI GeneCards UniProt
AIRE	0.51	AIRE Ensembl NCBI GeneCards UniProt
ZIC1	0.51	ZIC1 Ensembl NCBI GeneCards UniProt
POU4F1_POU4F3	0.50	POU4F1 Ensembl NCBI GeneCards UniProt POU4F3 Ensembl NCBI GeneCards UniProt
DMBX1	0.50	DMBX1 Ensembl NCBI GeneCards UniProt
POU4F2	0.50	POU4F2 Ensembl NCBI GeneCards UniProt
AGCCCUU	0.49	hsa-miR-129-1-3p miRBase hsa-miR-129-2-3p miRBase
OTX1	0.49	OTX1 Ensembl NCBI GeneCards UniProt
PAX1_PAX9	0.49	PAX1 Ensembl NCBI GeneCards UniProt PAX9 Ensembl NCBI GeneCards UniProt
NR2F1	0.49	NR2F1 Ensembl NCBI GeneCards UniProt
ACCACAG	0.48	hsa-miR-140-3p.2 miRBase
ONECUT2_ONECUT3	0.48	ONECUT2 Ensembl NCBI GeneCards UniProt ONECUT3 Ensembl NCBI GeneCards UniProt
AGCUUAU	0.47	hsa-miR-21-5p miRBase hsa-miR-590-5p miRBase
ALX1_ARX	0.47	ALX1 Ensembl NCBI GeneCards UniProt ARX Ensembl NCBI GeneCards UniProt
NKX2-2	0.47	NKX2-2 Ensembl NCBI GeneCards UniProt
ZNF232	0.47	ZNF232 Ensembl NCBI GeneCards UniProt
AACAGUC	0.47	hsa-miR-132-3p miRBase hsa-miR-212-3p miRBase
GGCAAGA	0.47	hsa-miR-31-5p miRBase
OTX2_CRX	0.47	OTX2 Ensembl NCBI GeneCards UniProt CRX Ensembl NCBI GeneCards UniProt
BATF3	0.47	BATF3 Ensembl NCBI GeneCards UniProt
UGUGCUU	0.46	hsa-miR-218-5p miRBase
UCACAUU	0.46	hsa-miR-23a-3p miRBase hsa-miR-23b-3p miRBase hsa-miR-23c miRBase hsa-miR-130a-5p miRBase
PDX1	0.45	PDX1 Ensembl NCBI GeneCards UniProt
NR1I3	0.45	NR1I3 Ensembl NCBI GeneCards UniProt
ZKSCAN3	0.44	ZKSCAN3 Ensembl NCBI GeneCards UniProt
ZNF350	0.44	ZNF350 Ensembl NCBI GeneCards UniProt
ZNF282	0.44	ZNF282 Ensembl NCBI GeneCards UniProt
ZNF691	0.44	ZNF691 Ensembl NCBI GeneCards UniProt
MSX2	0.43	MSX2 Ensembl NCBI GeneCards UniProt
ZBTB3	0.43	ZBTB3 Ensembl NCBI GeneCards UniProt
AUGGCAC	0.42	hsa-miR-183-5p.1 miRBase
AAUCUCA	0.42	hsa-miR-216a-5p miRBase
IRX6_IRX4	0.42	IRX6 Ensembl NCBI GeneCards UniProt IRX4 Ensembl NCBI GeneCards UniProt
AAGUGCU	0.42	hsa-miR-302a-3p miRBase hsa-miR-302b-3p miRBase hsa-miR-302c-3p.1 miRBase hsa-miR-302d-3p miRBase hsa-miR-302e miRBase hsa-miR-372-3p miRBase hsa-miR-373-3p miRBase hsa-miR-520a-3p miRBase hsa-miR-520b miRBase hsa-miR-520c-3p miRBase hsa-miR-520d-3p miRBase hsa-miR-520e miRBase
ISX	0.41	ISX Ensembl NCBI GeneCards UniProt
GUCAGUU	0.41	hsa-miR-223-3p miRBase
FOXN1	0.40	FOXN1 Ensembl NCBI GeneCards UniProt
PRDM14	0.40	PRDM14 Ensembl NCBI GeneCards UniProt
LHX2	0.39	LHX2 Ensembl NCBI GeneCards UniProt
ZNF410	0.39	ZNF410 Ensembl NCBI GeneCards UniProt
UCCCUUU	0.39	hsa-miR-204-5p miRBase hsa-miR-211-5p miRBase
AAUGCCC	0.39	hsa-miR-365a-3p miRBase hsa-miR-365b-3p miRBase
GAGAUGA	0.37	hsa-miR-143-3p miRBase hsa-miR-4770 miRBase hsa-miR-6088 miRBase
UBP1	0.36	UBP1 Ensembl NCBI GeneCards UniProt
HINFP1	0.36
UAAUGCU	0.36	hsa-miR-155-5p miRBase
AUGUGCC	0.35	hsa-miR-455-5p miRBase
ACUGGCC	0.34	hsa-miR-193a-3p miRBase hsa-miR-193b-3p miRBase
SOX21	0.34	SOX21 Ensembl NCBI GeneCards UniProt
ACAGUAC	0.34	hsa-miR-101-3p.1 miRBase
NKX1-1	0.34	NKX1-1 Ensembl NCBI GeneCards UniProt
UUGUUCG	0.33	hsa-miR-375 miRBase
ZNF8	0.33	ZNF8 Ensembl NCBI GeneCards UniProt ZNF8 Ensembl NCBI GeneCards UniProt
KLF7	0.32	KLF7 Ensembl NCBI GeneCards UniProt
PITX2	0.32	PITX2 Ensembl NCBI GeneCards UniProt
CUGGCUG	0.31	hsa-miR-3064-5p miRBase hsa-miR-6504-5p miRBase
CCAGCAU	0.31	hsa-miR-338-3p miRBase
UGCAGUC	0.30	hsa-miR-455-3p.2 miRBase
AAUCUCU	0.30	hsa-miR-216b-5p miRBase
UAAGACU	0.29	hsa-miR-499a-5p miRBase
UAAGACG	0.26	hsa-miR-208a-3p miRBase hsa-miR-208b-3p miRBase
GAUAUGU	0.25	hsa-miR-190a-5p miRBase hsa-miR-190b miRBase
GLIS1	0.25	GLIS1 Ensembl NCBI GeneCards UniProt
GGAGUGU	0.25	hsa-miR-122-5p miRBase
CUACAGU	0.24	hsa-miR-139-5p miRBase
ACUGCAU	0.23	hsa-miR-217 miRBase hsa-miR-6807-3p miRBase
CGUACCG	0.22	hsa-miR-126-3p.1 miRBase
CAGUCCA	0.22	hsa-miR-455-3p.1 miRBase
UGCAUUG	0.21	hsa-miR-33a-5p miRBase hsa-miR-33b-5p miRBase
CCACAGG	0.21	hsa-miR-140-3p.1 miRBase
ZBED1	0.19	ZBED1 Ensembl NCBI GeneCards UniProt ZBED1 Ensembl NCBI GeneCards UniProt
OVOL1	0.16	OVOL1 Ensembl NCBI GeneCards UniProt
GGACGGA	0.14	hsa-miR-184 miRBase
AACGGAA	0.14	hsa-miR-191-5p miRBase
UGACAUC	0.13	hsa-miR-489-3p miRBase
GCCUGUC	0.13	hsa-miR-214-5p miRBase
AACCUGG	0.13	hsa-miR-490-3p miRBase
CCUUGGC	0.12	hsa-miR-212-5p miRBase
UGACCUA	0.10	hsa-miR-192-5p miRBase hsa-miR-215-5p miRBase
GAGAACU	0.10	hsa-miR-146a-5p miRBase hsa-miR-146b-5p miRBase hsa-miR-7153-5p miRBase
AUGACAC	0.09	hsa-miR-425-5p miRBase
UGUGCGU	0.07	hsa-miR-210-3p miRBase
ACCCGUA	0.07	hsa-miR-99a-5p miRBase hsa-miR-99b-5p miRBase hsa-miR-100-5p miRBase
GAUCAGA	0.07	hsa-miR-383-5p.1 miRBase
CACCUCC	0.07	hsa-miR-1306-5p miRBase
UUUUUGC	0.05	hsa-miR-129-5p miRBase
AGAUCAG	0.04	hsa-miR-383-5p.2 miRBase
AACCGUU	0.02	hsa-miR-451a miRBase
CGUGUCU	0.02	hsa-miR-187-3p miRBase
GUACCGU	0.02	hsa-miR-126-3p.2 miRBase

All samples sorted alphabetically

Sample name	Condition	Replicate/Batch
Rep1_GM12878
Rep1_HepG2
Rep1_HMEC
Rep1_HSMM
Rep1_HUVEC
Rep1_K562
Rep1_NHEK
Rep1_NHLF
Rep2_GM12878
Rep2_HepG2
Rep2_HMEC
Rep2_HSMM
Rep2_HUVEC
Rep2_K562
Rep2_NHEK
Rep2_NHLF